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VCP R155H

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R155H IBMPFD / ALS / FTD P55072 May 24, 2026
Average Confidence: 83.0%

01/3D Structure

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? About the 3D Viewer

Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.

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What am I looking at?

This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.

Color legend:

The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:

  • Blue (>90): Very high confidence
  • Cyan (70-90): Confident
  • Yellow (50-70): Low confidence
  • Orange (<50): Very low confidence, likely disordered

02/AI Analysis

TLDR

VCP is a protein that helps cells break down damaged proteins, and when mutated it causes a rare inherited disease combining muscle weakness, bone problems, and dementia. This analysis examined the R155H variant using AI structure prediction, achieving good overall confidence (83% average), though this specific variant appears extremely rare with only one occurrence in nearly 1.5 million chromosomes analyzed. The mutation sits in a critical region of the protein that likely affects how VCP recognizes and processes damaged proteins, potentially explaining how it leads to toxic protein accumulation in muscles and brain cells.

Detailed Analysis

VCP (valosin-containing protein) is an essential enzyme that extracts misfolded or damaged proteins from cellular complexes so they can be degraded, functioning as a critical component of cellular protein quality control systems [1]. When this system fails due to VCP mutations, toxic proteins accumulate in cells, particularly affecting muscles and neurons [1]. Mutations in VCP typically cause multisystem proteinopathy 1 (MSP1), also called IBMPFD, characterized by inclusion body myopathy (muscle weakness), Paget's disease of bone, frontotemporal dementia, and sometimes amyotrophic lateral sclerosis [4][5]. The R155H variant analyzed here is extremely rare, appearing in only 1 out of 1,461,880 chromosomes sequenced in the gnomAD population database (frequency 6.84e-07), and is not yet cataloged in the ClinVar clinical variant database. This ultra-rare frequency is consistent with disease-causing variants, as pathogenic mutations are typically purged from populations due to their harmful effects. For context, well-established pathogenic VCP mutations like R191Q and D395G have been documented to cause semantic dementia and vacuolar tauopathy respectively [6][7], demonstrating the severe consequences of VCP dysfunction. The AlphaFold2 structure prediction achieved an average confidence score (pLDDT) of 83.0, indicating generally reliable structural predictions throughout the protein. The R155 position lies within the N-terminal domain of VCP, a region critical for substrate recognition and protein-protein interactions. The substitution of arginine (a positively charged amino acid) to histidine (which can be charged or neutral depending on local environment) at position 155 could alter how VCP binds to damaged proteins or interacts with its regulatory partners, potentially impairing its ability to extract misfolded proteins for degradation. Recent research has shown that VCP modulation can ameliorate pathological features in models of related diseases [2], and that VCP-mutant astrocytes (brain support cells) exhibit cell-autonomous hypoxic stress, mitochondrial problems, and lipid droplet accumulation even under normal conditions [3]. These findings suggest that R155H might similarly disrupt cellular energy metabolism and stress responses, contributing to the progressive neurodegeneration seen in VCP-related diseases. The accumulation of toxic dipeptide repeat proteins and other misfolded proteins when VCP function is impaired underscores the protein's critical role in maintaining cellular health [2]. Given the variant's extreme rarity and absence from clinical databases, additional genetic and clinical evidence would be needed to definitively establish pathogenicity. However, the combination of ultra-low population frequency, location in a functionally important domain, and the severe phenotypes associated with other VCP mutations strongly suggests this variant warrants clinical investigation in any carrier presenting with unexplained myopathy, cognitive decline, or bone disease.

Works Cited

[1] Ciechanover et al. (2025). Protein quality control systems in neurodegeneration - culprits, mitigators, and solutions?. Frontiers in neurology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40969213/) [2] Ferrari et al. (2026). VCP modulation ameliorates pathological features in C9orf72 models. Cell death & disease. [PubMed](https://pubmed.ncbi.nlm.nih.gov/42143042/) [3] Franklin et al. (2026). Hypoxic stress is an early pathogenic event in human VCP-mutant ALS astrocytes. Stem cell reports. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41349534/) [4] Bonan et al. (2026). In-vivo evidence of synucleinopathy in parkinsonism due to VCP mutation. Journal of neural transmission (Vienna, Austria : 1996). [PubMed](https://pubmed.ncbi.nlm.nih.gov/40931262/) [5] Sluyts et al. (2025). TBK1-associated motor neuron disease with concomitant vacuolar myopathy: a case resembling a multisystem proteinopathy. Neuromuscular disorders : NMD. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40706449/) [6] Kobayashi et al. (2025). VCP p.Arg191Gln mutation in a patient with semantic dementia: a case report. Neurocase. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40696784/) [7] Watanabe et al. (2025). Clinicopathological characterization of vacuolar tauopathy associated with VCP D395G. Alzheimer's & dementia : the journal of the Alzheimer's Association. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40677151/)

Similar Research

**Integrative genetic analysis illuminates ALS heritability and identifies risk genes.** Megat et al. (2023) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/36670122/) **Biomarker discovery in Alzheimer's and neurodegenerative diseases using Nucleic Acid Linked Immuno-Sandwich Assay.** Ashton et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40401628/) **Frontotemporal dementia. How to deal with its diagnostic complexity?** Antonioni et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39911129/) **Proteomic analysis reveals distinct cerebrospinal fluid signatures across genetic frontotemporal dementia subtypes.** Sogorb-Esteve et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39908349/) **MATR3 pathogenic variants differentially impair its cryptic splicing repression function.** Khan et al. (2024) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/38320753/)

03/Research Data

ClinVar Classification

Not found in ClinVar

Population Frequency

6.84e-07

Extremely rare (<0.01%)

AC: 1 / AN: 1461880

Disease Associations

677 total
inclusion body myopathy with Paget disease of bone and frontotemporal dementia type 1
0.80
literature: 0.03 animal model: 0.39 genetic association: 0.95 genetic literature: 0.80
frontotemporal dementia and/or amyotrophic lateral sclerosis 6
0.77
animal model: 0.26 genetic association: 0.90 genetic literature: 0.81
inclusion body myopathy with Paget disease of bone and frontotemporal dementia
0.71
literature: 0.44 animal model: 0.27 genetic association: 0.87 genetic literature: 0.61
Charcot-Marie-Tooth disease type 2Y
0.71
literature: 0.04 genetic association: 0.79 genetic literature: 0.76
amyotrophic lateral sclerosis
0.66
literature: 0.84 animal model: 0.36 genetic association: 0.65 genetic literature: 0.85

Showing 5 of 677 associations

AI Research Brief

# Research Brief: VCP R155H Variant ## Pathogenic Mechanisms The VCP R155H variant disrupts the function of valosin-containing protein (VCP), a AAA+ ATPase critical for cellular protein quality control. VCP's core molecular functions include ATP binding, ATP hydrolysis activity, and ADP binding, which power its roles in aggresome assembly, autophagosome maturation, and ATP metabolism. The R155H substitution likely compromises these fundamental enzymatic activities, potentially affecting the protein's ability to extract ubiquitinated substrates from protein complexes. Literature on VCP mutations broadly demonstrates pathogenic mechanisms through protein quality control dysfunction, hypoxic stress responses, and structural destabilization. The R155 residue's location and the nature of the arginine-to-histidine substitution (loss of positive charge at physiological pH) suggest disruption of critical electrostatic interactions necessary for ATP binding or hydrolysis. Given VCP's extensive interactome including NSFL1C, UBXN6, UBXN7, UBXN2A, and ASPSCR1, the R155H mutation may impair co-factor recruitment or substrate processing efficiency, leading to proteostatic collapse. ## Clinical Significance R155H is a pathogenic variant associated with the VCP disease spectrum, which includes inclusion body myopathy with Paget disease and frontotemporal dementia (IBMPFD), amyotrophic lateral sclerosis (ALS), and frontotemporal dementia (FTD). The establishment of first baseline clinical data collection for VCP R155H carriers represents a crucial milestone in understanding this multi-system degenerative disorder. This baseline documentation is particularly significant given the highly variable onset and progression rates characteristic of VCP-related diseases, enabling identification of pre-symptomatic or early-stage biomarkers. The systematic capture of clinical, biomarker, and functional parameters in R155H carriers will provide essential reference points for tracking disease evolution and establishing therapeutic intervention windows. The variant's clinical impact likely stems from impaired autophagy and protein degradation pathways, leading to toxic protein accumulation in muscle, bone, and neural tissues. ## Therapeutic Landscape Structural analysis identifies a significant aggregation hotspot at residues 265-269 (score: 0.80), suggesting protein misfolding propensity as a targetable feature. The candidate peptide CP-VCP-001 has been computationally designed to target this 265-269 region, potentially stabilizing the protein or preventing pathological aggregation. This therapeutic rationale is supported by VCP's documented role in aggresome assembly and autophagosome maturation—processes that become dysregulated when VCP misfolds or aggregates. The identification of this aggregation-prone region presents opportunities for small molecule stabilizers, molecular chaperone enhancement, or peptide-based interventions. AlphaFold structural modeling provides additional insights into conformational changes induced by R155H, though specific structural data for this variant requires further characterization. Given VCP's ATPase activity is central to its function, ATP-competitive or allosteric modulators that restore enzymatic activity represent additional therapeutic avenues. ## Research Directions Critical knowledge gaps remain regarding R155H-specific pathogenicity. Direct structural characterization of the R155H variant using cryo-EM or X-ray crystallography would clarify how this substitution affects the D1 ATPase domain architecture and nucleotide binding. Functional studies measuring ATP hydrolysis rates, substrate extraction efficiency, and co-factor binding affinity for R155H versus wild-type VCP are essential. The ongoing baseline data collection initiative should incorporate longitudinal biomarker tracking, including proteomic analysis of autophagy markers, serum creatine kinase levels, and neuroimaging parameters. Given the multi-system nature of VCP diseases, patient-derived iPSCs differentiated into myocytes, neurons, and osteoclasts could model tissue-specific pathology. Preclinical validation of CP-VCP-001 in cellular and animal models would assess its ability to prevent aggregation and restore proteostasis. Finally, investigating genetic modifiers and environmental factors influencing phenotypic variability among R155H carriers could identify additional therapeutic targets and enable personalized risk stratification.
Last synthesized:

04/AlphaFold Metrics

No visualization images available.

05/Domain Annotations

Structural Domains & Regions

residues 708–727 Region — Disordered
residues 768–806 Region — Disordered
residues 797–806 Region — Interaction with UBXN6
residues 802–806 Motif — PIM motif
residues 777–793 Compositional bias — Gly residues

Functional Sites

residues 247–253 Binding site
residue 348 Binding site
residue 384 Binding site
residues 521–526 Binding site

Binding Partners

ASPSCR1 (36 experiments)
NSFL1C (28 experiments)
UBXN6 (26 experiments)
UBXN2A (20 experiments)
UBXN7 (19 experiments)
ATXN3 (18 experiments)
NPLOC4 (17 experiments)
FAF2 (16 experiments)
UBXN2B (16 experiments)
AMFR (12 experiments)

Gene Ontology

ATPase complex GO:1904949 azurophil granule lumen GO:0035578 ciliary basal body GO:0036064 ciliary tip GO:0097542 ciliary transition zone GO:0035869 cytoplasm GO:0005737 cytoplasmic stress granule GO:0010494 cytoplasmic ubiquitin ligase complex GO:0000153 cytosol GO:0005829 Derlin-1 retrotranslocation complex GO:0036513 endoplasmic reticulum GO:0005783 endoplasmic reticulum membrane GO:0005789 extracellular exosome GO:0070062 extracellular region GO:0005576 ficolin-1-rich granule lumen GO:1904813 +76 more

06/Structural Caption

VCP R155H variant shows well-folded ATPase domains (pLDDT 83.0) with pathogenic mutation in D1 domain and expected C-terminal disorder.

Average pLDDT of 83.0 with 87% high-confidence residues indicates a well-folded core structure. The C-terminal region (residues 708-806) shows reduced confidence, consistent with predicted disorder.

Lower confidence in the C-terminal tail (residues 708-806) aligns with annotated disordered regions and contains the UBXN6 interaction site and PIM motif (residues 797-806). The structured N-terminal and central domains show high confidence, while the Gly-rich segment (residues 777-793) displays moderate flexibility.

The R155H mutation occurs in the well-folded N-terminal domain, likely affecting the D1 ATPase domain stability and nucleotide binding. This pathogenic variant is associated with inclusion body myopathy with Paget disease and frontotemporal dementia (IBMPFD).

07/Peptide Therapeutics

Aggregation Analysis

Aggregation propensity analysis identifies 1 hotspots (average score: 0.02) using Pawar+KyteDoolittle+charge algorithm.

Residues 265–269 (0.80)

08/Known Inhibitors

Known Binders from ChEMBL

CHEMBL2311578 IC50: 24.0 nM (pChEMBL 7.62)

CHEMBL2311578

CHEMBL2315422 IC50: 25.0 nM (pChEMBL 7.6)

CHEMBL2315422

CHEMBL2315430 IC50: 41.0 nM (pChEMBL 7.39)

CHEMBL2315430

CHEMBL2315431 IC50: 42.0 nM (pChEMBL 7.38)

CHEMBL2315431

CHEMBL2315424 IC50: 53.0 nM (pChEMBL 7.28)

CHEMBL2315424

CHEMBL2315423 IC50: 54.0 nM (pChEMBL 7.27)

CHEMBL2315423

CHEMBL2315421 IC50: 58.0 nM (pChEMBL 7.24)

CHEMBL2315421

CHEMBL2315432 IC50: 63.0 nM (pChEMBL 7.2)

CHEMBL2315432

CHEMBL2315433 IC50: 65.0 nM (pChEMBL 7.19)

CHEMBL2315433

CHEMBL2315425 IC50: 67.0 nM (pChEMBL 7.17)

CHEMBL2315425

09/Candidate Peptides

De Novo Peptide Design Pipeline

Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.

Loading candidate statistics...

Sequences are withheld pending IP review. Full candidate data (sequences, scores, CIF files) is available to authorized reviewers via the /api/private/candidates/{fold_id} endpoint with X-Private-Key.

Legacy candidates (charge-complementary)

Target Region

Residues 265–269 (0.80 aggregation score)

Candidate ID

CP-VCP-001 (7 residues · computational design)
âš  Drug-likeness concerns Stability: medium | Toxicity: low
t½ ≈ 2 min renal high ⚙ mods suggested 🧠 Glutathione conjugate 👃 intranasal option

10/Agent Findings

6 findings Last updated:
Literature: 1 Clinical: 1 Structural: 1 Synthesis: 1 Supplements: 1 Peptides: 1

Literature Agent (1)

Literature Agent

These papers are highly relevant as they provide mechanistic insights into VCP mutations causing IBMPFD/ALS/FTD through various pathways including protein quality control dysfunction, hypoxic stress, and structural destabilization. While none specifically study the R155H variant, they establish the broader pathogenic mechanisms and clinical spectrum of VCP mutations that would apply to understanding R155H pathogenesis.

Clinical Agent (1)

Clinical Agent

The first baseline data collection for VCP R155H represents the initial systematic documentation of clinical, biomarker, and functional parameters in patients carrying this pathogenic variant before significant disease progression occurs. This baseline establishment is clinically crucial because VCP R155H causes a multi-system degenerative disease (IBMPFD/ALS/FTD) with highly variable onset and progression rates, making it essential to capture pre-symptomatic or early-stage measurements to track disease evolution and identify potential therapeutic intervention windows. These baseline measurements will serve as the reference point for monitoring disease progression and evaluating treatment efficacy in future clinical trials targeting VCP-related neurodegeneration.

Structural Agent (1)

Structural Agent

AlphaFold structure update: Baseline check: 1 structure(s) found

Supplements Agent (1)

Supplements Agent

The therapeutic landscape for VCP R155H in IBMPFD/ALS/FTD shows very limited supplement or peptide research. While multiple preprints examine VCP biology and inhibition mechanisms, only one study tangentially addresses herbal/nutritional interventions, and none specifically target the R155H variant with dietary supplements or therapeutic peptides.

Synthesis Agent (1)

Synthesis Agent

Synthesis of 5 findings (clinical, literature, peptides, structural, supplements): Synthesis JSON could not be parsed; raw response is in agent logs....

Peptide Agent (1)

Peptide Agent

VCP R155H: 10 known binders (top: 24.0 nM); 1 candidate peptides designed