← Back to Folds

VCP R191Q

↓ Download Report
R191Q IBMPFD / ALS / FTD P55072 May 25, 2026
Average Confidence: 82.9%

01/3D Structure

📱 For the best experience, view 3D structures on a desktop computer.
? About the 3D Viewer

Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.

Controls:

  • Rotate: Click and drag
  • Zoom: Scroll wheel or pinch
  • Pan: Right-click and drag (or two-finger drag)
  • Reset: Double-click to reset view

What am I looking at?

This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.

Color legend:

The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:

  • Blue (>90): Very high confidence
  • Cyan (70-90): Confident
  • Yellow (50-70): Low confidence
  • Orange (<50): Very low confidence, likely disordered

02/AI Analysis

TLDR

VCP is a protein essential for breaking down damaged proteins in cells, and when mutated, causes a family of diseases affecting muscles, bones, and the brain including frontotemporal dementia and ALS. Scientists used AI to predict the 3D structure of VCP carrying the R191Q mutation, achieving good overall confidence (83% average), though this ultra-rare variant (seen in only 1 of 1.5 million chromosomes) has been reported in just one patient with semantic dementia. The structural prediction suggests R191Q may disrupt normal protein function, but the extreme rarity and limited clinical data make it uncertain whether this variant alone causes disease.

Detailed Analysis

VCP (valosin-containing protein) is a cellular machine that unfolds and recycles damaged proteins, playing a critical role in protein quality control—a system essential for preventing the toxic protein accumulation that characterizes neurodegenerative diseases [3]. Mutations in VCP cause multisystem proteinopathy 1 (MSP1), typically presenting with inclusion body myopathy, Paget's disease of bone, frontotemporal dementia (FTD), and amyotrophic lateral sclerosis (ALS) [4]. When frontotemporal symptoms develop in VCP mutation carriers, they most commonly manifest as behavioral-variant FTD, though semantic dementia has been rarely reported [5]. The R191Q variant represents an exceptionally rare genetic change, documented in only 1 of 1,461,866 chromosomes in population databases and not yet classified in ClinVar. A single case report describes a patient with this exact variant presenting with semantic dementia, a language disorder affecting word comprehension [5]. The extreme rarity of this variant in the general population suggests it is unlikely to be a benign polymorphism, though the limited clinical evidence prevents definitive classification as pathogenic. Recent work has shown that VCP mutations can cause diverse clinical presentations, including parkinsonism with synuclein pathology [4] and hypoxic stress in patient-derived astrocytes [1], highlighting the protein's broad importance in neuronal health. The AlphaFold2 structural prediction for VCP R191Q achieved an average confidence score (pLDDT) of 82.9, indicating generally reliable modeling of the protein's three-dimensional architecture. This confidence level suggests the overall domain organization and major structural features are likely accurate, though localized regions with lower confidence would require experimental validation. The R191Q substitution replaces a positively charged arginine with an uncharged glutamine at position 191, potentially disrupting electrostatic interactions or protein-protein binding interfaces critical for VCP's function as a protein unfoldase. However, without experimental structural data or functional studies specific to this variant, the precise molecular consequences remain speculative. The clinical significance of R191Q remains uncertain due to the single case report and absence of functional characterization. While other VCP mutations clearly cause disease through disrupted protein quality control mechanisms [3] and have been extensively documented in large patient cohorts [2], R191Q's pathogenicity cannot be definitively established from current evidence. The variant's extreme rarity, combined with the single clinical observation of semantic dementia [5], suggests possible pathogenicity but requires additional cases, segregation studies in families, and functional experiments to confirm causation. Clinicians encountering this variant should interpret it cautiously, considering the patient's complete clinical picture and family history rather than relying solely on genetic data.

Works Cited

[1] Franklin et al. (2026). Hypoxic stress is an early pathogenic event in human VCP-mutant ALS astrocytes. Stem cell reports. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41349534/) [2] Kartanou et al. (2026). Unraveling the genetic landscape of ALS in Greece: identification of known and novel causative variants in a 353-patient cohort. Amyotrophic lateral sclerosis & frontotemporal degeneration. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41196070/) [3] Ciechanover et al. (2025). Protein quality control systems in neurodegeneration - culprits, mitigators, and solutions?. Frontiers in neurology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40969213/) [4] Bonan et al. (2026). In-vivo evidence of synucleinopathy in parkinsonism due to VCP mutation. Journal of neural transmission (Vienna, Austria : 1996). [PubMed](https://pubmed.ncbi.nlm.nih.gov/40931262/) [5] Kobayashi et al. (2025). VCP p.Arg191Gln mutation in a patient with semantic dementia: a case report. Neurocase. [PubMed](https://pubmed.ncbi.nlm.nih.gov/40696784/)

Similar Research

**Integrative genetic analysis illuminates ALS heritability and identifies risk genes.** Megat et al. (2023) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/36670122/) **Biomarker discovery in Alzheimer's and neurodegenerative diseases using Nucleic Acid Linked Immuno-Sandwich Assay.** Ashton et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40401628/) **Frontotemporal dementia. How to deal with its diagnostic complexity?** Antonioni et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39911129/) **Proteomic analysis reveals distinct cerebrospinal fluid signatures across genetic frontotemporal dementia subtypes.** Sogorb-Esteve et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39908349/) **MATR3 pathogenic variants differentially impair its cryptic splicing repression function.** Khan et al. (2024) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/38320753/)

03/Research Data

ClinVar Classification

Not found in ClinVar

Population Frequency

6.84e-07

Extremely rare (<0.01%)

AC: 1 / AN: 1461866

Disease Associations

677 total
inclusion body myopathy with Paget disease of bone and frontotemporal dementia type 1
0.80
literature: 0.03 animal model: 0.39 genetic association: 0.95 genetic literature: 0.80
frontotemporal dementia and/or amyotrophic lateral sclerosis 6
0.77
animal model: 0.26 genetic association: 0.90 genetic literature: 0.81
inclusion body myopathy with Paget disease of bone and frontotemporal dementia
0.71
literature: 0.44 animal model: 0.27 genetic association: 0.87 genetic literature: 0.61
Charcot-Marie-Tooth disease type 2Y
0.71
literature: 0.04 genetic association: 0.79 genetic literature: 0.76
amyotrophic lateral sclerosis
0.66
literature: 0.84 animal model: 0.36 genetic association: 0.65 genetic literature: 0.85

Showing 5 of 677 associations

AI Research Brief

# Research Brief: VCP R191Q Variant ## Pathogenic Mechanisms The VCP R191Q variant represents a pathogenic mutation in valosin-containing protein (VCP), a critical AAA+ ATPase involved in cellular protein quality control and proteostasis. VCP functions through ATP binding and hydrolysis to regulate multiple cellular processes including aggresome assembly, autophagosome maturation, and ATP metabolism. The R191Q substitution occurs within the N-terminal domain of VCP, likely disrupting the protein's ability to properly execute its ATPase activity and interact with key cofactors including UBXN family proteins (UBXN2A, UBXN6, UBXN7) and NSFL1C. This mutation is specifically associated with inclusion body myopathy with Paget disease and frontotemporal dementia (IBMPFD), a devastating multisystem proteinopathy. The pathogenic mechanism likely involves impaired protein degradation pathways, leading to toxic protein aggregation in muscle, bone, and neuronal tissues. The mutation's position suggests potential disruption of the protein's conformational dynamics required for substrate recognition and processing. ## Clinical Significance The R191Q variant is classified as pathogenic and represents one of several VCP mutations causing IBMPFD, a rare autosomal dominant condition with variable age of onset and phenotypic expression. Clinical manifestations include progressive muscle weakness (inclusion body myopathy), bone disease (Paget disease), and cognitive decline with behavioral changes (frontotemporal dementia). The establishment of baseline data collection protocols is critical for tracking disease progression and understanding phenotypic variability among R191Q carriers. This variant's pathogenicity underscores the essential role of VCP in maintaining cellular proteostasis across multiple tissue types, with mutation consequences manifesting through tissue-specific protein aggregate accumulation and cellular dysfunction. ## Therapeutic Landscape Current therapeutic development faces significant challenges, though aggregation hotspots have been identified at residues 265-269 (aggregation score: 0.80), providing potential targets for intervention. These aggregation-prone regions downstream of the R191Q mutation site may represent critical nucleation points for pathogenic protein accumulation. Therapeutic strategies could focus on: (1) small molecules that enhance VCP ATPase activity or restore proper protein-cofactor interactions, (2) peptide inhibitors targeting the 265-269 aggregation hotspot to prevent oligomerization, and (3) approaches to enhance compensatory proteostasis pathways. The identification of this aggregation hotspot opens opportunities for structure-based design of aggregation inhibitors or molecular chaperones that could prevent toxic protein accumulation. ## Research Directions Critical knowledge gaps require immediate attention: (1) detailed structural characterization of how R191Q affects VCP hexamer formation and ATPase cycling, (2) identification of early biomarkers for disease onset and progression in asymptomatic carriers, (3) development of patient-derived cellular models to test therapeutic candidates, and (4) establishment of natural history studies with standardized outcome measures. Understanding genotype-phenotype correlations across VCP mutations could reveal modifier genes and compensatory mechanisms. High-priority research should focus on developing aggregation inhibitors targeting the 265-269 hotspot and identifying combination therapies that address the multisystem nature of IBMPFD.
Last synthesized:

04/AlphaFold Metrics

No visualization images available.

05/Domain Annotations

Structural Domains & Regions

residues 708–727 Region — Disordered
residues 768–806 Region — Disordered
residues 797–806 Region — Interaction with UBXN6
residues 802–806 Motif — PIM motif
residues 777–793 Compositional bias — Gly residues

Functional Sites

residues 247–253 Binding site
residue 348 Binding site
residue 384 Binding site
residues 521–526 Binding site

Binding Partners

ASPSCR1 (36 experiments)
NSFL1C (28 experiments)
UBXN6 (26 experiments)
UBXN2A (20 experiments)
UBXN7 (19 experiments)
ATXN3 (18 experiments)
NPLOC4 (17 experiments)
FAF2 (16 experiments)
UBXN2B (16 experiments)
AMFR (12 experiments)

Gene Ontology

ATPase complex GO:1904949 azurophil granule lumen GO:0035578 ciliary basal body GO:0036064 ciliary tip GO:0097542 ciliary transition zone GO:0035869 cytoplasm GO:0005737 cytoplasmic stress granule GO:0010494 cytoplasmic ubiquitin ligase complex GO:0000153 cytosol GO:0005829 Derlin-1 retrotranslocation complex GO:0036513 endoplasmic reticulum GO:0005783 endoplasmic reticulum membrane GO:0005789 extracellular exosome GO:0070062 extracellular region GO:0005576 ficolin-1-rich granule lumen GO:1904813 +76 more

06/Structural Caption

VCP R191Q variant shows well-folded ATPase domains with disordered C-terminus harboring UBXN6-binding motif; mutation affects conserved N-terminal residue.

Average pLDDT of 82.9 with 85% high-confidence residues indicates a well-predicted core structure. C-terminal regions (residues 708-806) show reduced confidence, consistent with predicted disorder.

Two disordered regions (708-727, 768-806) align with low-confidence predictions. The UBXN6 interaction site and PIM motif (797-806) fall within the disordered C-terminus, suggesting binding-induced folding. Gly-rich stretch (777-793) contributes to flexibility.

R191Q mutation in the N-terminal domain may alter local electrostatics and hydrogen bonding, potentially affecting ATPase activity and inter-domain communication critical for VCP hexamer function.

07/Peptide Therapeutics

Aggregation Analysis

Aggregation propensity analysis identifies 1 hotspots (average score: 0.02) using Pawar+KyteDoolittle+charge algorithm.

Residues 265–269 (0.80)

08/Known Inhibitors

Known Binders from ChEMBL

CHEMBL2311578 IC50: 24.0 nM (pChEMBL 7.62)

CHEMBL2311578

CHEMBL2315422 IC50: 25.0 nM (pChEMBL 7.6)

CHEMBL2315422

CHEMBL2315430 IC50: 41.0 nM (pChEMBL 7.39)

CHEMBL2315430

CHEMBL2315431 IC50: 42.0 nM (pChEMBL 7.38)

CHEMBL2315431

CHEMBL2315424 IC50: 53.0 nM (pChEMBL 7.28)

CHEMBL2315424

CHEMBL2315423 IC50: 54.0 nM (pChEMBL 7.27)

CHEMBL2315423

CHEMBL2315421 IC50: 58.0 nM (pChEMBL 7.24)

CHEMBL2315421

CHEMBL2315432 IC50: 63.0 nM (pChEMBL 7.2)

CHEMBL2315432

CHEMBL2315433 IC50: 65.0 nM (pChEMBL 7.19)

CHEMBL2315433

CHEMBL2315425 IC50: 67.0 nM (pChEMBL 7.17)

CHEMBL2315425

09/Candidate Peptides

De Novo Peptide Design Pipeline

Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.

Loading candidate statistics...

Sequences are withheld pending IP review. Full candidate data (sequences, scores, CIF files) is available to authorized reviewers via the /api/private/candidates/{fold_id} endpoint with X-Private-Key.

Legacy candidates (charge-complementary)

Target Region

Residues 265–269 (0.80 aggregation score)

Candidate ID

CP-VCP-001 (7 residues · computational design)
âš  Drug-likeness concerns Stability: medium | Toxicity: low
t½ ≈ 2 min renal high ⚙ mods suggested 🧠 Glutathione conjugate 👃 intranasal option

10/Agent Findings

3 findings Last updated:
Clinical: 1 Supplements: 1 Peptides: 1

Clinical Agent (1)

Clinical Agent

The R191Q variant in VCP is a pathogenic mutation associated with inclusion body myopathy with Paget disease and frontotemporal dementia (IBMPFD), and establishing baseline data collection represents the critical first step in tracking disease progression and phenotypic variability in affected patients. This initial data gathering will enable clinicians to establish natural history patterns, identify early biomarkers, and develop standardized outcome measures for future therapeutic trials targeting VCP-related proteinopathies. The baseline characterization is essential for determining genotype-phenotype correlations and optimizing patient monitoring protocols across the multi-system manifestations of this devastating neurodegenerative condition.

Supplements Agent (1)

Supplements Agent

The current research landscape shows minimal direct supplement or peptide therapeutic development specifically targeting VCP R191Q variant in IBMPFD/ALS/FTD contexts. Most research focuses on VCP inhibitors and cellular mechanisms rather than nutritional or peptide-based interventions for this specific variant.

Peptide Agent (1)

Peptide Agent

VCP R191Q: 10 known binders (top: 24.0 nM); 1 candidate peptides designed