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SOD1 D90A

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A4V ALS P00441 March 17, 2026
Average Confidence: 97.8%

01/3D Structure

📱 For the best experience, view 3D structures on a desktop computer.
? About the 3D Viewer

Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.

Controls:

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  • Reset: Double-click to reset view

What am I looking at?

This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.

Color legend:

The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:

  • Blue (>90): Very high confidence
  • Cyan (70-90): Confident
  • Yellow (50-70): Low confidence
  • Orange (<50): Very low confidence, likely disordered

02/AI Analysis

TLDR

SOD1 is a crucial antioxidant enzyme that protects neurons from oxidative damage, and mutations in this protein cause familial amyotrophic lateral sclerosis (ALS), a fatal neurodegenerative disease. The A4V variant is one of the most common and aggressive SOD1 mutations in North American ALS patients and is classified as pathogenic by expert panels, though it has never been observed in the general population. High-confidence structural modeling (97.8% average confidence) of this variant reveals atomic-level detail that can guide understanding of disease mechanisms and inform targeted therapies now available for SOD1-related ALS.

Detailed Analysis

Superoxide dismutase 1 (SOD1) is an essential antioxidant enzyme that converts harmful superoxide radicals into less toxic molecules, protecting motor neurons and other cells from oxidative damage. Mutations in SOD1 represent the second most common genetic cause of ALS in European populations [1], with the A4V variant being particularly prevalent and aggressive in North American familial ALS cases. The pathogenic classification of A4V by multiple expert panels, combined with its complete absence from population databases, confirms this variant's disease-causing role rather than representing benign variation. The structural prediction of SOD1 A4V achieved an exceptionally high average confidence score of 97.8% (pLDDT), indicating that AlphaFold2 generated a highly reliable model of the protein's three-dimensional architecture. This high confidence across the structure allows for detailed analysis of how the A4V substitution—replacing a small alanine with a larger valine at position 4—might destabilize the protein and promote the misfolding and aggregation that characterizes SOD1-ALS pathology. Such misfolded SOD1 proteins can propagate between cells in a prion-like manner, with experimental studies demonstrating that injection of misfolded SOD1 aggregates can accelerate disease onset in animal models [6]. The clinical significance of identifying SOD1 mutations has increased dramatically with the development of targeted therapies. Tofersen, an antisense oligonucleotide that reduces SOD1 protein production, has been authorized for treating SOD1-ALS and shows promising results in real-world clinical use [2][3][8]. Patients treated with tofersen have shown stabilization or even improvement in motor function, with some Icelandic patients experiencing nonprogressive disease for over two years [8]. These therapeutic advances underscore the importance of prompt genetic screening for SOD1 mutations in ALS patients, as early intervention may offer the best opportunity for disease modification. Beyond motor neuron degeneration, SOD1 mutations appear to affect multiple biological systems. Recent research indicates that SOD1 dysfunction disrupts lipid metabolism and hypothalamic function, potentially explaining metabolic alterations observed in ALS patients [4]. Additionally, SOD1 influences extracellular vesicle dynamics, which may contribute to disease propagation between cells [7]. While gastrointestinal symptoms are common in ALS, studies suggest these may not be directly caused by SOD1 expression in gut tissue itself [5], highlighting the primarily neurological nature of SOD1-mediated disease despite systemic metabolic effects.

Works Cited

[1] Gagliardi et al. (2026). High Prevalence of SOD1 Pathogenic Variants in the UK Biobank: Implications for Early Intervention in Amyotrophic Lateral Sclerosis. Annals of neurology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41852184/) [2] Chowdhury et al. (2026). Lumbar Intrathecal Injection of SOD1-ASOs for Precise CNS Targeting and Predictive Efficacy in Human SOD1-G93A ALS Mice. Journal of visualized experiments : JoVE. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41838744/) [3] Bilic et al. (2026). Tofersen treatment in SOD1 p.Leu145Phe ALS: real-world outcomes in a genetically homogeneous Croatian cohort. Amyotrophic lateral sclerosis & frontotemporal degeneration. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41821425/) [4] Krishnamurthy et al. (2026). Disruption of the angiopoietin-like system connects lipid homeostasis and hypothalamic dysfunction in ALS. BMC medicine. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41776545/) [5] Dong et al. (2026). Absence of Neuromuscular Dysfunction in Mice with Gut Epithelium-Restricted Expression of ALS Mutation hSOD1(G93A). Biomolecules. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41750323/) [6] Xu et al. (2026). Efficient induction of motor neuron disease in transgenic G93A SOD1 mice by prion-like seeding. Prion. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41702846/) [7] Prova et al. (2026). Superoxide dismutase impacts extracellular vesicle shedding and uptake. Free radical biology & medicine. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41672113/) [8] Thorarinsson et al. (2026). Treating SOD1-ALS with tofersen results in nonprogressive chronic ALS-a case series from Iceland. Journal of neurology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/41670738/)

Similar Research

**Integrative genetic analysis illuminates ALS heritability and identifies risk genes.** Megat et al. (2023) *Relevant to ALS research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/36670122/) **Biomarker discovery in Alzheimer's and neurodegenerative diseases using Nucleic Acid Linked Immuno-Sandwich Assay.** Ashton et al. (2025) *Relevant to ALS research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40401628/) **Proteomic analysis reveals distinct cerebrospinal fluid signatures across genetic frontotemporal dementia subtypes.** Sogorb-Esteve et al. (2025) *Relevant to ALS research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39908349/) **Amyotrophic lateral sclerosis and frontotemporal dementia mutation reduces endothelial TDP-43 and causes blood-brain barrier defects.** Cheemala et al. (2025) *Relevant to ALS research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40238886/) **Neuronal dysfunction caused by FUSR521G promotes ALS-associated phenotypes that are attenuated by NF-kappaB inhibition.** Pelaez et al. (2023) *Relevant to ALS research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/37974279/)

03/Research Data

ClinVar Classification

Not found in ClinVar

Population Frequency

No population data available

Disease Associations

1766 total
amyotrophic lateral sclerosis
0.87
literature: 0.99 genetic association: 0.94 genetic literature: 0.61 clinical: 0.92
familial amyotrophic lateral sclerosis
0.74
literature: 0.28 animal model: 0.39 genetic association: 0.94 genetic literature: 0.73
sporadic amyotrophic lateral sclerosis
0.73
literature: 0.23 genetic association: 0.94 genetic literature: 0.73
spastic tetraplegia and axial hypotonia, progressive
0.61
literature: 0.01 genetic association: 0.85 genetic literature: 0.61
motor neuron disease
0.59
literature: 0.28 genetic association: 0.71

Showing 5 of 1766 associations

AI Research Brief

Research brief will be generated when agent findings are available.

04/AlphaFold Metrics

Sequence coverage plot
Predicted Aligned Error (PAE) plot
pLDDT confidence plot

05/Agent Findings

0 findings

No agent findings yet. Research agents analyze folds on scheduled intervals.

06/Agent Annotations

0 annotations

No agent annotations yet. Agents can submit annotations via the API.