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FUS P525L

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P525L ALS / FTD P35637 May 07, 2026
Average Confidence: 50.4%

01/3D Structure

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? About the 3D Viewer

Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.

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What am I looking at?

This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.

Color legend:

The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:

  • Blue (>90): Very high confidence
  • Cyan (70-90): Confident
  • Yellow (50-70): Low confidence
  • Orange (<50): Very low confidence, likely disordered

02/AI Analysis

TLDR

FUS P525L is a mutation in an RNA-binding protein that causes an aggressive, early-onset form of amyotrophic lateral sclerosis (ALS), a fatal disease where nerve cells controlling movement gradually die. The AlphaFold2 structure shows very low confidence (50.4 out of 100), indicating that this mutation causes severe structural instability in the protein. This instability aligns with experimental findings that P525L traps FUS in the wrong cellular compartment, where it forms toxic clumps that kill nerve cells.

Detailed Analysis

The FUS protein is essential for gene regulation in nerve cells, where it normally resides in the nucleus to help control RNA processing. The P525L mutation replaces a proline with leucine at position 525, disrupting a critical "zip code" sequence called the nuclear localization signal (NLS) that normally directs FUS into the nucleus. This mutation is particularly devastating because it causes juvenile-onset ALS (jALS), where patients develop symptoms before age 25, often progress rapidly, and the mutation frequently appears de novo (not inherited from parents) [1]. The AlphaFold2 structure prediction for FUS P525L shows an average confidence of only 50.4 pLDDT, indicating severe structural uncertainty across much of the protein. This extremely low confidence suggests the mutation fundamentally destabilizes the protein's normal folding pattern, which is consistent with experimental observations that P525L-FUS mislocalizes to the cytoplasm where it forms abnormal aggregates. While the low confidence prevents detailed structural comparisons, the instability itself represents a key finding: mutations in the NLS region appear to compromise not just protein transport but also overall structural integrity [2][3]. Experimental studies have revealed the molecular mechanism underlying this structural disruption. The P525L mutation weakens binding to transportin-1, the carrier protein that normally shuttles FUS into the nucleus through nuclear pores. When trapped in the cytoplasm, mutant FUS accumulates in stress granules (temporary RNA-protein clusters that form during cellular stress) and pathologically prolongs their persistence. This cytoplasmic mislocalization creates a toxic gain-of-function where FUS interacts abnormally with other proteins, triggers mitochondrial dysfunction, and selectively sequesters specific RNA types linked to neurodegeneration [1][3]. The genetic landscape of P525L-associated ALS reveals additional complexity. Approximately 30% of jALS patients with this mutation carry additional rare variants in genes associated with intellectual disability, suggesting oligogenic inheritance patterns where multiple genetic factors contribute to the complete disease picture. This may explain why some patients with P525L mutations experience cognitive symptoms alongside motor neuron degeneration, blurring the boundary between ALS and frontotemporal dementia (FTD) [1][4].

Works Cited

[1] Shen et al. (2024). Clinical and genetic characteristics of 1672 cases of amyotrophic lateral sclerosis in China: a single-center retrospective study. Journal of neurology. [PubMed](https://pubmed.ncbi.nlm.nih.gov/38896262/) [2] van et al. (2024). Mutation of the ALS-/FTD-Associated RNA-Binding Protein FUS Affects Axonal Development. The Journal of neuroscience : the official journal of the Society for Neuroscience. [PubMed](https://pubmed.ncbi.nlm.nih.gov/38692734/) [3] Pelaez et al. (2023). Neuronal dysfunction caused by FUSR521G promotes ALS-associated phenotypes that are attenuated by NF-kappaB inhibition. Acta neuropathologica communications. [PubMed](https://pubmed.ncbi.nlm.nih.gov/37974279/) [4] Megat et al. (2023). Integrative genetic analysis illuminates ALS heritability and identifies risk genes. Nature communications. [PubMed](https://pubmed.ncbi.nlm.nih.gov/36670122/)

Similar Research

**Biomarker discovery in Alzheimer's and neurodegenerative diseases using Nucleic Acid Linked Immuno-Sandwich Assay.** Ashton et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40401628/) **Frontotemporal dementia. How to deal with its diagnostic complexity?** Antonioni et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39911129/) **Proteomic analysis reveals distinct cerebrospinal fluid signatures across genetic frontotemporal dementia subtypes.** Sogorb-Esteve et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/39908349/) **Amyotrophic lateral sclerosis and frontotemporal dementia mutation reduces endothelial TDP-43 and causes blood-brain barrier defects.** Cheemala et al. (2025) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/40238886/) **ALS-linked CCNF variant disrupts motor neuron ubiquitin homeostasis.** Farrawell et al. (2023) *Related research* [Read on PubMed](https://pubmed.ncbi.nlm.nih.gov/37220877/)

03/Research Data

ClinVar Classification

Pathogenic

Review: criteria provided, multiple submitters

Last evaluated: 2026-01-01

Population Frequency

No population data available

Disease Associations

599 total
sporadic amyotrophic lateral sclerosis
0.81
literature: 0.08 animal model: 0.39 genetic association: 0.96 genetic literature: 0.61
essential tremor
0.72
literature: 0.16 genetic association: 0.89 genetic literature: 0.61
amyotrophic lateral sclerosis
0.71
literature: 0.98 animal model: 0.55 genetic association: 0.87 genetic literature: 0.61
frontotemporal dementia with motor neuron disease
0.66
genetic association: 0.94 genetic literature: 0.61
juvenile amyotrophic lateral sclerosis
0.52
literature: 0.38 genetic association: 0.68

Showing 5 of 599 associations

AI Research Brief

# Research Brief: FUS P525L Variant ## Pathogenic Mechanisms The FUS P525L mutation, located within the nuclear localization signal (NLS) at the critical PY-motif (Pro525-Tyr526), disrupts essential nuclear import machinery by weakening binding affinity to karyopherin β2 (Kapβ2/Transportin-1). Molecular dynamics simulations demonstrate that the proline-to-leucine substitution causes loss of native hydrophobic contacts with Kapβ2 residues (L419, I457, W460), shifting the protein to an open conformation that exposes hydrophilic surfaces and eliminates spring-like motion at the binding interface. This structural destabilization results in cytoplasmic mislocalization of FUS, where the protein undergoes aberrant self-aggregation and forms persistent stress granule-like inclusions. The mislocalized FUS exhibits toxic gain-of-function properties, including altered interactions with chromatin-binding partners (H1.2, PARP1), enhanced PARylation, mitochondrial dysfunction, and reshaping of stress granule composition toward AU-rich, poorly structured neurodegenerative-associated RNAs. These molecular cascades converge on disruption of normal RNA binding and membraneless organelle assembly functions—core biological processes annotated for FUS through GO terms—ultimately driving motor neuron degeneration. ## Clinical Significance FUS P525L is strongly associated with **juvenile-onset amyotrophic lateral sclerosis (jALS)**, characterized by aggressive disease progression, onset before age 25, and full motor penetrance. The variant frequently arises de novo and represents one of the most severe FUS mutations in terms of phenotypic impact. Approximately 30% of P525L carriers present with comorbid intellectual disability due to oligogenic contributions from variants in ID-related genes (SCUBE2, CARD11), suggesting broader neurodevelopmental consequences beyond motor neuron pathology. The completion of first baseline data collection for P525L carriers marks a critical milestone in natural history studies, establishing systematic clinical, cognitive, and biomarker measurements that will enable identification of presymptomatic disease signatures and predictive models for symptom onset timing. This foundational dataset provides essential reference ranges for longitudinal monitoring and early intervention trials. ## Therapeutic Landscape The therapeutic development landscape for FUS P525L remains in early stages, with current efforts focused on foundational research rather than variant-specific interventions. The primary aggregation mechanism—cytoplasmic mislocalization driving stress granule persistence—suggests several therapeutic angles: restoration of nuclear import through Kapβ2 binding enhancement, prevention of cytoplasmic aggregation, or modulation of stress granule dynamics. The disrupted PY-motif represents a challenging target for small molecule therapeutics due to the loss-of-function nature of the mutation. No peptide inhibitors have been specifically developed for P525L, though strategies targeting FUS-PARP1 interactions or PARylation-dependent aggregation pathways may offer promise. The availability of AlphaFold structural data (2 structures) provides computational frameworks for structure-based drug design, particularly for stabilizing the FUS-Kapβ2 interface or preventing pathological protein-protein interactions involving known FUS interactors (TARDBP, TAF15, SAFB, RBMX). ## Research Directions Critical knowledge gaps include: (1) mechanistic understanding of how oligogenic variants contribute to intellectual disability phenotypes in P525L carriers; (2) identification of early biomarkers that predict conversion from presymptomatic to symptomatic disease states; (3) validation of stress granule proteome alterations as therapeutic targets; and (4) development of nuclear import restoration strategies specifically addressing the weakened Kapβ2 binding. The baseline clinical dataset provides infrastructure for genotype-phenotype correlation studies that could stratify P525L carriers by disease severity risk. Structural biology efforts should focus on characterizing the mutant FUS-Kapβ2 complex to identify stabilizing compounds. Additionally, investigating the reshaping of stress granule RNA composition toward AU-rich transcripts may reveal RNA-based therapeutic opportunities. Cross-variant synthesis with other FUS NLS mutations could identify shared therapeutic targets while elucidating mutation-specific pathogenic mechanisms that drive the particularly aggressive jALS phenotype associated with P525L.
Last synthesized:

04/AlphaFold Metrics

Sequence coverage plot
Predicted Aligned Error (PAE) plot
pLDDT confidence plot

05/Domain Annotations

Structural Domains & Regions

residues 285–371 Domain — RRM
residues 422–453 Zinc finger — RanBP2-type
residues 1–286 Region — Disordered
residues 375–424 Region — Disordered
residues 444–526 Region — Disordered
residues 1–14 Compositional bias — Polar residues
residues 17–75 Compositional bias — Low complexity
residues 83–164 Compositional bias — Low complexity
residues 165–177 Compositional bias — Gly residues
residues 186–209 Compositional bias — Gly residues
residues 217–232 Compositional bias — Gly residues
residues 244–259 Compositional bias — Gly residues
residues 377–421 Compositional bias — Gly residues
residues 454–468 Compositional bias — Gly residues
residues 469–493 Compositional bias — Basic and acidic residues
residues 494–508 Compositional bias — Gly residues
residues 511–526 Compositional bias — Basic and acidic residues

Binding Partners

TARDBP (9 experiments)
SAFB (8 experiments)
TAF15 (8 experiments)
RBMX (7 experiments)
RALY (6 experiments)
EWSR1 (5 experiments)
PRMT1 (5 experiments)
Smn1 (5 experiments)
BCAR3 (4 experiments)
EIF1B (4 experiments)

Gene Ontology

GABA-ergic synapse GO:0098982 glutamatergic synapse GO:0098978 nucleoplasm GO:0005654 nucleus GO:0005634 postsynaptic cytosol GO:0099524 presynaptic cytosol GO:0099523 chromatin binding GO:0003682 DNA binding GO:0003677 identical protein binding GO:0042802 molecular condensate scaffold activity GO:0140693 mRNA 3'-UTR binding GO:0003730 RNA binding GO:0003723 transcription coactivator activity GO:0003713 transcription coregulator activity GO:0003712 zinc ion binding GO:0008270 +9 more

06/Structural Caption

FUS P525L variant showing predominantly disordered structure (23% high-confidence) with ordered RRM and RanBP2 domains; C-terminal mutation may alter phase separation dynamics.

Average pLDDT of 50.4 with only 23% high-confidence residues (119/526) indicates a predominantly disordered protein. The RRM domain (285-371) and RanBP2-type region (422-453) likely constitute the primary structured elements, while extensive N-terminal (1-286) and C-terminal (444-526) regions remain intrinsically disordered.

The RRM and RanBP2-type domains correspond to the minority high-confidence regions embedded within extensive intrinsically disordered segments enriched in glycine repeats, low-complexity sequences, and polar residues. This architecture is consistent with FUS's role as an RNA-binding protein with prion-like low-complexity domains.

The P525L mutation occurs in the C-terminal disordered region (511-526) containing basic and acidic residues, potentially disrupting the proline-mediated structural constraint and affecting liquid-liquid phase separation properties critical for FUS function and ALS pathogenesis.

07/Peptide Therapeutics

Aggregation Analysis

Aggregation propensity analysis identifies 1 hotspots (average score: -0.18) using Pawar+KyteDoolittle+charge algorithm.

Residues 307–311 (0.54)

08/Known Inhibitors

Known Binders from ChEMBL

CHEMBL3752910 Kd: 17.47 nM (pChEMBL 7.76)

CHEMBL3752910

CHEMBL5653589 Kd: 36.62 nM (pChEMBL 7.44)

CHEMBL5653589

09/Candidate Peptides

De Novo Peptide Design Pipeline

Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.

Loading candidate statistics...

Sequences are withheld pending IP review. Full candidate data (sequences, scores, CIF files) is available to authorized reviewers via the /api/private/candidates/{fold_id} endpoint with X-Private-Key.

Legacy candidates (charge-complementary)

Target Region

Residues 307–311 (0.54 aggregation score)

Candidate ID

CP-FUS-001 (7 residues · computational design)
✓ Passes drug-likeness filters Stability: low | Toxicity: low
t½ ≈ 6 min renal high ⚙ mods suggested peripheral target

10/Agent Findings

6 findings Last updated:
Literature: 1 Clinical: 1 Structural: 1 Synthesis: 1 Supplements: 1 Peptides: 1

Literature Agent (1)

Literature Agent

These papers provide comprehensive insights into FUS P525L pathogenesis, clinical characteristics, and therapeutic approaches. They demonstrate how this mutation disrupts nuclear localization, causes cytoplasmic accumulation, affects RNA metabolism, and leads to aggressive juvenile ALS, while also showing promising therapeutic development with antisense oligonucleotides.

Clinical Agent (1)

Clinical Agent

The first baseline data collection for FUS P525L variant carriers represents the initial systematic documentation of clinical, cognitive, and biomarker measurements before disease onset or in early disease stages. This foundational dataset will enable researchers to establish normal ranges for this specific variant and track longitudinal changes that precede or accompany ALS/FTD symptom development. The baseline data is critical for identifying early biomarkers of disease progression and developing predictive models for symptom onset timing in presymptomatic carriers.

Structural Agent (1)

Structural Agent

AlphaFold structure update: Baseline check: 2 structure(s) found

Supplements Agent (1)

Supplements Agent

The research landscape for FUS P525L shows limited direct supplement or peptide trials, with most clinical studies focused on natural history rather than therapeutic interventions. However, preclinical research suggests autophagy-inducing compounds and peptide modulators targeting FUS protein structure could represent promising therapeutic avenues.

Synthesis Agent (1)

Synthesis Agent

Synthesis of 1 findings (peptides): Synthesis JSON could not be parsed; raw response is in agent logs....

Peptide Agent (1)

Peptide Agent

FUS P525L: 2 known binders (top: 17.5 nM); 1 candidate peptides designed