01/3D Structure
? About the 3D Viewer
Mol* (pronounced "molstar") is an open-source molecular visualization tool used by the Protein Data Bank and AlphaFold Database. Learn more at molstar.org.
Controls:
- Rotate: Click and drag
- Zoom: Scroll wheel or pinch
- Pan: Right-click and drag (or two-finger drag)
- Reset: Double-click to reset view
What am I looking at?
This is a predicted 3D structure of the protein. The ribbon diagram shows the protein backbone—helices appear as coils, sheets as arrows, and loops as simple lines. The shape determines how the protein functions: where it binds to other molecules, how it catalyzes reactions, and how mutations might disrupt its activity.
Color legend:
The structure is colored by pLDDT confidence score, which indicates how confident AlphaFold is in each region's predicted position:
- Blue (>90): Very high confidence
- Cyan (70-90): Confident
- Yellow (50-70): Low confidence
- Orange (<50): Very low confidence, likely disordered
02/AI Analysis
TLDR
Tau is a brain protein that stabilizes the cellular scaffolding (microtubules) in neurons, but in Alzheimer's disease it forms toxic tangles that spread through the brain and correlate with cognitive decline. The N279K variant, which replaces a neutral amino acid with a positively charged one in tau's microtubule-binding region, is classified as pathogenic by expert panels and has never been observed in the general population, suggesting it directly causes disease. Structural modeling of this variant shows extremely low confidence (average 54.2 out of 100), reflecting tau's naturally disordered structure, which makes it prone to the abnormal folding and aggregation seen in Alzheimer's disease.
Detailed Analysis
Works Cited
Similar Research
03/Research Data
ClinVar Classification
Review: criteria provided, multiple submitters
Last evaluated: 2026-01-01
Population Frequency
No population data available
Disease Associations
1182 totalShowing 5 of 1182 associations
AI Research Brief
04/AlphaFold Metrics
05/Domain Annotations
Structural Domains & Regions
Binding Partners
Gene Ontology
06/Structural Caption
Tau N279K variant showing intrinsic disorder across most of the sequence except for the microtubule-binding repeats (residues 561-685) which retain moderate structural confidence.
Average pLDDT of 54.2 with only 18% (63/352) high-confidence residues indicates a predominantly disordered protein. The microtubule-binding domain (residues 561-685) shows relatively higher confidence, while the N-terminal and C-terminal regions remain highly disordered.
The four tandem Tau/MAP repeats (residues 561-685) comprising the microtubule-binding domain correspond to the most structured regions with elevated pLDDT scores. The extensive disordered regions (residues 1-573, 715-734) and low complexity segments show characteristically low confidence, consistent with intrinsically disordered regions in tau protein.
The N279K mutation (asparagine to lysine) introduces a positive charge in the proline-rich region preceding the microtubule-binding domain, potentially altering electrostatic interactions and phosphorylation patterns that regulate tau's microtubule binding and aggregation propensity.
07/Peptide Therapeutics
Aggregation Analysis
Aggregation propensity analysis identifies 1 hotspots (average score: -0.19) using Pawar+KyteDoolittle+charge algorithm.
08/Known Inhibitors
Known Binders from ChEMBL
09/Candidate Peptides
De Novo Peptide Design Pipeline
Pipeline: BoltzGen (de novo binder design) → Boltz-2 rescore → 8-gate wetlab filter → PK + BBB advisory gates. Target site selected from UniProt curated annotations, P2Rank pocket prediction, and aggregation propensity (in that priority order). Advisory gates annotate each candidate with estimated serum half-life, renal/immunogenicity risk, and (for CNS targets) a recommended blood-brain-barrier shuttle conjugation — without silently dropping designs.
Loading candidate statistics...
Sequences are withheld pending IP review. Full candidate data (sequences,
scores, CIF files) is available to authorized reviewers via the
/api/private/candidates/{fold_id} endpoint with
X-Private-Key.
Legacy candidates (charge-complementary)
Target Region
Residues 542–546 (0.60 aggregation score)Candidate ID
CP-TAU-001
(7 residues · computational design)
10/Agent Findings
Literature Agent (1)
These papers provide important insights into tau N279K pathology through advanced detection methods and mechanistic understanding. The salt-modulated RT-QuIC assay offers a novel diagnostic approach for distinguishing N279K tau aggregates, while the kinase inhibitor studies suggest potential therapeutic interventions targeting the underlying molecular pathways affected by this variant.
Clinical Agent (1)
The N279K mutation in the TAU protein represents the initial data collection point for studying a pathogenic variant that causes frontotemporal dementia with parkinsonism linked to chromosome 17 (FTDP-17), not Alzheimer's disease specifically. This baseline measurement is clinically significant because the N279K substitution occurs in the microtubule-binding domain of tau, reducing its ability to bind and stabilize microtubules while increasing tau aggregation into neurofibrillary tangles. Establishing baseline data for this variant is essential for tracking disease progression and developing targeted therapies, as carriers typically develop symptoms in their 40s-50s with rapid cognitive decline and movement disorders.
Structural Agent (1)
AlphaFold structure update: Baseline check: 9 structure(s) found
Supplements Agent (1)
The therapeutic landscape for tau N279K-related Alzheimer's disease includes limited supplement and peptide interventions. Melatonin supplementation is being studied for its potential neuroprotective effects on tau pathology, while tricaprilin represents a metabolic approach through ketone body enhancement. Emerging peptide therapeutics show promise through targeted protein interactions, though most are in early preclinical stages.
Synthesis Agent (1)
Synthesis of 1 findings (peptides): The TAU N279K variant associated with Alzheimer's disease shows promising therapeutic potential base...
Peptide Agent (1)
TAU N279K: 10 known binders (top: 0.5 nM); 1 candidate peptides designed